Scaffold Ga0310121_10027590

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310121_10027590

Scaffold Ga0310121_10027590

Overview

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10027590 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4027
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)		Depth (m)	486
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F016759	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100275901	F013596	N/A	MEAFAQSLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYITEVERKNRSLQNKLNSMQKGPELSEIGNLDGVLPDLIGQLDGILPKWATKFIKGQPDLVNTVIEYAKSNPDKAKELIGRFVKIKPATKSSSDDSMPGL
Ga0310121_100275904	F007837	N/A	VDLKTTAAQLIINYPAQHLGLSNSVMVDNQDAANAVTVRFNLQINAVVIAAGNFRTFNDAWIEQINLTGPSTNTQVTSQVSPIQQISPYGQGVTN
Ga0310121_100275905	F016759	AGGTGG	MEPIQRRMQNPVVGALNVPVNLVDQVTGLTFIQLGQPNTILDLYNAVDPAAAADTYEYGLDKNSISTGRTFFSTAMSTASAGRAAVGPIRLSAGQLQMTGTPTGAAFPALDQNIVIKFSNGF

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