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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031801 Open in IMG/M |
| Scaffold ID | Ga0310121_10028072 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3986 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 73.0038 | Long. (o) | -140.0007 | Alt. (m) | Depth (m) | 486 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003091 | Metagenome / Metatranscriptome | 508 | Y |
| F005749 | Metagenome | 391 | Y |
| F012582 | Metagenome / Metatranscriptome | 279 | Y |
| F013775 | Metagenome | 268 | Y |
| F037260 | Metagenome | 168 | Y |
| F055198 | Metagenome / Metatranscriptome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310121_1002807212 | F037260 | N/A | MAKKKKEKIPFHIAHNYKQWTSDQGYSFWAKDEEDAKLYLEKTEGNLGSLKEVEVKDV |
| Ga0310121_1002807213 | F003091 | AGGAG | MSMLPRKPITKPGEGKQREKYVSQERYLEERYQISVGLKGPKRLEGESYEDFCIRRKAENGLLHEYLRGVWIKREE |
| Ga0310121_1002807214 | F012582 | AGG | MTEFHKKLRHLSTTMLHWAEDNKIQRKVVEGIAGEYEIPQRNGVDWKEDFKFVTKLDRMLADGLDDKLKKKEMEMCNQLYKYYGNVYVKI |
| Ga0310121_1002807215 | F055198 | GGA | MSRFEEASCKVLGVMLFLIICLLVVQLNGCTTCVNVPPPPIELEYIDEVDTSHLV |
| Ga0310121_100280726 | F013775 | AGTAGG | MVEKRQYETVKEFAKDYRTEIIPMMKSKGFTLSINTSKGSYWNDGRMNFQIKKVPSNFYVWTHEYNRYSKTEKSQKLLSAVRDRVKKLVAENTTLDVDLNFDYHKDVRYKPIPEGWDDNDRNY |
| Ga0310121_100280728 | F005749 | AGGAG | MKKKSWLLTMSFDEHDGSPNDIKTLYHGKTKRDMVKDMNLFQDMNEHLVLALVEIDEKSTYDKIVDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |