NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10213160

Scaffold Ga0310121_10213160


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10213160 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1169
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F001922Metagenome617Y
F036732Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_102131601F036732N/AKTAVLKQFFESGISLHLHPDLSHADGVFKYSKQRVSSLGQ
Ga0310121_102131602F000730GAGLVNELIPAEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKAEGSVHTDGQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIFQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKSI
Ga0310121_102131603F001922GGAMIQKLLVEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFRATISGGIWLNSLAGFFGLNFPTTLPEWVTKLFTTGFHNITFWQIVQVIAVLIVVVEYMQYDRMLKQTNEKPNVTTGAVFAMIGLGLSLITFPQIIQKAKEMRIINGS
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