NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10263069

Scaffold Ga0310121_10263069


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10263069 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F024888Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0310121_102630691F024888AGAAGGMPVDIKTFQHWPKLIGYHNENGDIMNLDKIDLKNIHKIVAKIVDGIHKKVMKGKTPDEFAQEGGFDNWMEYAAWSRHTGGDYHMMEMMLKSKWKEQDPEEFARQKKIQSDQSLREHSYINLPPKAWPTSVPNKNDFASRFIGNKKKKWQPVHKSNFTAEQLEKVYDDFGVGGEPVEYTW
Ga0310121_102630692F001048N/AMKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVNKRVRWELGSEGMTIWDACGYKDIPTLAKAYRIS
Ga0310121_102630693F000615N/ARRNQNNIVSGLERPVNIMCRIRTFYECSDGTMGFAEMVLSYDEDIAGHIRHWSTGGRMVITEHIDLV
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