NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310121_10405342

Scaffold Ga0310121_10405342


Overview

Basic Information
Taxon OID3300031801 Open in IMG/M
Scaffold IDGa0310121_10405342 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)486
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F051476Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0310121_104053422F001048GAGMKIKSTKQFWWRLNYLKRNGGEITVTDRTSEMDVKDFNRIESLVRKRVRWELGSEGMAIWDACGYKDIPTLAKAYRIS
Ga0310121_104053423F051476GAGGMTYWKARLIIRERKSFGLKFHKSELFESLAKARLWSMKEAKLVVADRLFNDTDIVTEINSHEFV
Ga0310121_104053424F000615N/AYECSDGTMGWTEMVVSYDTDIAGLIRHLGTGGRMVTTEYIELV
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Institute for Fundamental Biomedical Research
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