NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10004459

Scaffold Ga0310123_10004459


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10004459 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10598
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F002150Metagenome589Y
F008596Metagenome331N

Sequences

Protein IDFamilyRBSSequence
Ga0310123_1000445913F008596GGAGMSGAWDIATATTLGTGVAKTQINGGNNVTKPTQAVNLVETIPYTVSSGAYTAGQSVALTAEIDSYSVDLLPKRMIVPPIQSGLGTSANIVVPLLEAYECNTGLQQGATSQLIISGQAQIANTVGPLMAMALHYSTTPPNRPEHFYHKADDETNFTTATTTSGSSFTINDGMWCEDLYVSAFTAVYTVSQSLSGYGEFSSNDFGNSLPLKVPMQPGGAGLGSTGTQGILKLGAYHNTHMPMKTSCKINTAFTNDVTQTGTTSFVMGVGYTKQ
Ga0310123_1000445914F002100AGCAGMPYHIPDTQVSERPALIKPVYDVSNFGEDLVLPLNCLSGSSTTLTPSTATFVQVLEDSKVPIDSVNMFIMDSDKMELVHAGDDADYDTTWQFDVDMSNQAYQITMNFAVAMKVSAYSSGNFKIDDVQCIIKQTGGGEGDYTYVNKIIDPGMSNMTSATEQVAIINFSTNVSAKVADKPLTFQIKVNTSAGSGTYQCGIVPLFSYLGPAVPKTWTTSSVLLHVHADLAHAFPIFRDEDNMNMIDTGIGI
Ga0310123_1000445916F002150AGGMMVSVAVPAYATKKAKDVTGEFLKEKMGYDFVNLVTKLAIFYVISFLISKYMEAVIYFQGGLSTVAGFFGIKMAQADQLPRQWVELFIDVNQKTVSSTPVGEGKFNPEGWDKPYDYGSLEHQEDQPYLFPEKEQKFKFWDLINAIAVLYIGWESYKYYKNAQLSDKGVDYLTMAIFSLLVLMIGVLSFSKFLGRFSFNKFQEENR
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