NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10005670

Scaffold Ga0310123_10005670


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10005670 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9327
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F002745Metagenome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_100056702F002715AGGAMPEHELQSVKLEVGLLKSEVEVRGKQIETLLQKLDLTTDKLQELTVQIIKLNTRQEDYLRHSSSMGDEFKILHTRIGDLHDKQLAANKEIENRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD
Ga0310123_100056704F000245AGGMKTFTRFKESKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPNKPAFKFPSPNSDMMIYVYLRPMKGKKGMMAFNYQLEDK
Ga0310123_100056705F002745GAGMKSFKGYLTEFAMQSTSDYVFNAGSSSSGLMIPISGPMFKRIWPDTIRTTVFHTTDLSGLKALKKLEGGKKTISAFFSMMSRYLESGIATGGGIVVEMDADVLISARDDIMSQVDKTGRRWVEMSWFANAQSYGTGPAFGKVEKELNTLIANLVKKHLPKGKEVEQTRFFAHDTGTVFDIWGNMKRHLKGDGRKIAAVIKDYFDGVEKVIKKNKEVMGGIFYGFAKSKRMTDNSWDEQIVNNIDIYKIHVISEKDDQEGADWRKDEIKEIADWPIKIWNYSSELEIYTREVVNAEIRSMGTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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