NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10018030

Scaffold Ga0310123_10018030


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10018030 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5044
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004843Metagenome421Y
F008155Metagenome / Metatranscriptome338Y
F015350Metagenome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_1001803010F004843N/AMKWMFIIAIALSLNGCADTADAESSAAITPVENQEETTTTTSNETIWVAIVMTWNPVVYTIDKEFSSEVDCWNYYDTGVGESKMLNSYGTQVLDHQGNKPDKEYMKKHRPSHREYPTRMYKNFGGWMMWLTCDIKGRYEDL
Ga0310123_1001803011F015350N/AMAILVGWQYDAFQKNLHEVESRIKKFESVDLFNILEQISLAHIESVDTVDILNKKQMELQALEEEIKEKFAIQERELRTQVKTIETKLQKLRSELYDGLTEIERDVSTIDSVVDEKFKTLWMMINNK
Ga0310123_100180307F008155N/AMTHHEHQHLATLVYDIGLKKQIEERVEAKYSKRIEYLVNANNELMYELEQCELECYGRGYEGTTNAR
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