 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031802 Open in IMG/M |
| Scaffold ID | Ga0310123_10036899 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3464 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 800 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038275 | Metagenome / Metatranscriptome | 166 | N |
| F078827 | Metagenome | 116 | Y |
| F080148 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310123_100368993 | F078827 | N/A | MAEFQALQTATAEWKPHQIAKAGDIASMAKAAGDLAEVVKETLSLASAGMEVVKLLAQLQNINPLLIALDALADEVLIAIQNIKEAGFWYLYVDPYFIKNVAAEPAFTYGFEQLRNPAGDRLWMAKNELGEFTQTTTTPTQAQLDAKTVIPHLATPRKMIPGGFNPYEGKGVADPLAAMSPFPKFSVQNVITEFTKAFDDEGDVPRYRKAGSNPPKEGVVVYDKDGNAYDGWNPVKEFGLQLYDIGKAQEDGSIVKDYKAARKPINSKIAPGKPNILGQTSYVGGSGAIAIIIAAPSFDIFAETFDKFSKMFTDIPEFAATTGKGLLDSLNDVLTPARTVIKLSEVDTNYGIFEAGDVIGGEIYGGVAKILEVNADSVIASTMSTQQEVSATDDAGNIIRYVTTLDPNEDERWIDMEVVGNPIRQVDGLNPFITGDTVYEMEQRGTRTDDSPNYVIKGQNTVGLPKPERIYPKVGKVSMEKLEVLPDSTPPDFGGIQIKEIIPGWGEFFQILENFVLQLKGMISDSTAFIQDMIDMIKGIEKFLQDLIDAIVEFLEFFQITLPSTGVYALYLPNQSGGNDGIKSQLSGAGGIPDLGYAAGILFVATEGDVFIAGGGSKNPIDLLALVLGLL |
| Ga0310123_100368994 | F038275 | N/A | MPETNMKFIMEEQRSINMAHPTGKWAEAEIRRDDIKDLMEKTKKLATMYSDLLAIKREGWENVLRAQVKREAKEKEKQNG |
| Ga0310123_100368995 | F080148 | N/A | NRIAEIDARIGVPVYANSTHASGVTPAVRSKPPCIRVKTIPTANATSGYVPYGREIYDNVNLLLGGDVDLLGGIIKDIESLGDLVQLVKNARNKYEIYNGRAKEY |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |