NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10128194

Scaffold Ga0310123_10128194


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10128194 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F013646Metagenome / Metatranscriptome269N
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0310123_101281941F060030AGGMVIQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATISGGIWLNSLGSFFNLKFPSTLPEWLTQLFTTGYKGFTFWNLVTTISVLIVVV
Ga0310123_101281943F000704AGGTGGMPHDEILPSRVKAIITYDISNYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPAVFSDTDAGLLLNEGNNTAFSQTYTFLPDMTAVIYAIHLNIPAALTCSAYTSGGLNVGALHIKITERSTDNRLLYENTFQSGAATLSATGTSLHWFTRDIVETIQVTKGNPIDILVELVTVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVMKYKKSRVSMLG
Ga0310123_101281944F013646N/AITGLYTVVSGATATASQHDVGYSEYISPDFNTSMPYRVAVQPTYTGLGSAAGASTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRN
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