Scaffold Ga0310123_10198627

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310123_10198627

Scaffold Ga0310123_10198627

Overview

Basic Information
Taxon OID	3300031802 Open in IMG/M
Scaffold ID	Ga0310123_10198627 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1354
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	74.6947	Long. (^o)	-146.6612	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F060030	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_101986271	F060030	N/A	MIQKLLVEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTT
Ga0310123_101986273	F000704	N/A	HARSEILPSNVKAVATYGIDAYGEDLFLPFTDVGLTETALTFSTAAITRDLEDSNQPMDDFPAVYSDTDAGLLLNEGDDTAFSQTYSFVPDMTAIIYAVHLVFPAIVTCSNFVSGSLNVGALHIKITERSTNNRLLYENTFQSNAANLTGTGTSLHFFQRDIVETIKIEKGNPIDILVELVTVKTGTNTRQEGYCGLAPYLKTAVLKRFTPAGIALHLHADLSHADGVFKYKEDRVSMLG

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