NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10224485

Scaffold Ga0310123_10224485


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10224485 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1259
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005103Metagenome / Metatranscriptome412Y
F005400Metagenome / Metatranscriptome402Y
F039182Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_102244852F005400N/AMTREWKCTDAHPNSPLLGKNFKGFKDLTHTNMCYRCDYCSQPYQNIYWLHQLAIEYFICDNCKEYYKVSINDLLKLQYVQNRQEWNDATWNQFFPYPIGFDI
Ga0310123_102244853F005103GAGMENKVQIFIDKKEMLYSHQNMARVINSFLPYLTNNDLTDLGQDILDLMDHREKKEAESNLEVEKHSWPYPDTKKQT
Ga0310123_102244855F039182N/AMYIIIMVVALGLNGCADTADAEDSTTTTPVEQQEANERSDLASDDTTWIAVVMTWNPVHRVIDKEFTTEVECWNYYENGVGEGKFGSQHRDHQDNLPTKDFHFGPDYLEYPIRTYRGINDEQGQVWLTCDLKGRYKDL
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