Scaffold Ga0310123_10256282

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310123_10256282

Scaffold Ga0310123_10256282

Overview

Basic Information
Taxon OID	3300031802 Open in IMG/M
Scaffold ID	Ga0310123_10256282 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1163
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	74.6947	Long. (^o)	-146.6612	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F003617	Metagenome / Metatranscriptome	477	Y
F060030	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_102562821	F060030	AGG	MVIQKLLVEEGMKRGLKASREYSVSVLGYDFVGLISRLAIFFLTGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWVTKLFTTGLKNITFWQIVQTIAVLIVVVEYMQYDRM
Ga0310123_102562822	F000730	GAG	LVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKAEGSVHTDSQIDDLINNAPRILNEINKTIAEQKSAGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKAI
Ga0310123_102562823	F003617	N/A	YKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTNDRLLYENTFQSSAATLSATGTSMHWFTQDIVETIKINKGNPVDIQLNLITVVTGVNTRQEGYAPVAPLLKTAVMKPFFESGMSLHLHPDLSHADGVFKYKKDRVSMLGQ

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