NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310123_10346419

Scaffold Ga0310123_10346419


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10346419 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F011673Metagenome288Y
F012781Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_103464191F011673GGAGMNKPSTTKILPICLQPRILAAVSFIHKSPNKEIGIERINKVRRKLSDREMLYVLSLLVFDQLLDMVQDSDEFKNLVPTKRTIN
Ga0310123_103464192F000423N/AMKINKAIFYIKYYAKKHDCIIERKATLDENCFEGHHKKFGYPYKKYIDVWATEEINNGEPQYRTASKKWEINNEQTINH
Ga0310123_103464193F012781AGGAMFGEKKNSILTTTLIVQVRKYKDEQPYFSLYSPPSMADETKAKEVVEKLNEVEQYKVDEIKKGWQTQYYTLPMTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.