NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310120_10017401

Scaffold Ga0310120_10017401


Overview

Basic Information
Taxon OID3300031803 Open in IMG/M
Scaffold IDGa0310120_10017401 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4469
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005883Metagenome / Metatranscriptome387Y
F019664Metagenome / Metatranscriptome228Y
F025767Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0310120_100174011F005883GAGMNALSKVKRFGTSGMVYRRGQQIVLENETTTEHRAVKVIMHDSMQGWLAENGEGDWQWYKENKQEKDPTETEYWKYIKKVGT
Ga0310120_100174015F019664N/AVKETDDGKTIDGQDAGAVPAASTNSRVMYQGIFDFSRILNAYYYTPDEWSRSIGWGTVPDERNTLLGANQDRLTDENLQEDSTTPQEPMMTSISRNMP
Ga0310120_100174019F025767AGCAGMAQRVVRMMAVGKSNRDNMEYRMVNPETGEAEDITATVADMLTLKAEGWVMVFTPNPNSIIAGRDTSGQGGGHKSSQGWKDVLGRIKDNNPGSTIDV
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