NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310124_10015656

Scaffold Ga0310124_10015656


Overview

Basic Information
Taxon OID3300031804 Open in IMG/M
Scaffold IDGa0310124_10015656 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4741
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)79.9957Long. (o)-149.9767Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013821Metagenome268Y
F089039Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0310124_100156567F089039AGGAGGMAQRKGFPGPMTRGQKGAYRGIQKKENYPGGLDITAGNEMGFRSEGRSVKRGADKRGTFGMKLRRA
Ga0310124_100156568F013821AGGMATNQEARQTSIRAVTSTTGTHDEDWVALFTTRSAPAGTYNERLLSYINTKLSTSHTNLNDALQALAAN

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