Basic Information | |
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Taxon OID | 3300031804 Open in IMG/M |
Scaffold ID | Ga0310124_10039954 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2915 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 79.9957 | Long. (o) | -149.9767 | Alt. (m) | Depth (m) | 800 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003091 | Metagenome / Metatranscriptome | 508 | Y |
F005749 | Metagenome | 391 | Y |
F041256 | Metagenome / Metatranscriptome | 160 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310124_1003995410 | F003091 | AGGAG | MTMLPQKPITKPGEGNERQKYLSEEKYLEERYQISAGLRGPKRLEKESHEDFHLRRKAENGLLKEY |
Ga0310124_100399542 | F041256 | GAG | MNLNEYLIENDRHIGDVVILNSVATALDKVSGDTFPMMVDNTIGVDEPMNIMEMEINGDSYEWFEALSDNDKSAVDEVMVNLSYESWVEGHIGEPEYLGER |
Ga0310124_100399545 | F005749 | GGAG | MKKSWLLTMSFDEHDGSPNDIKTLYHGKTKHGMVKTMNLFQDMNEHLVLALVEIDEKSTYDKIIDKEDTEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA |
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