NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310124_10039954

Scaffold Ga0310124_10039954


Overview

Basic Information
Taxon OID3300031804 Open in IMG/M
Scaffold IDGa0310124_10039954 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2915
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)79.9957Long. (o)-149.9767Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F005749Metagenome391Y
F041256Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0310124_1003995410F003091AGGAGMTMLPQKPITKPGEGNERQKYLSEEKYLEERYQISAGLRGPKRLEKESHEDFHLRRKAENGLLKEY
Ga0310124_100399542F041256GAGMNLNEYLIENDRHIGDVVILNSVATALDKVSGDTFPMMVDNTIGVDEPMNIMEMEINGDSYEWFEALSDNDKSAVDEVMVNLSYESWVEGHIGEPEYLGER
Ga0310124_100399545F005749GGAGMKKSWLLTMSFDEHDGSPNDIKTLYHGKTKHGMVKTMNLFQDMNEHLVLALVEIDEKSTYDKIIDKEDTEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA
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