Scaffold Ga0310124_10108827

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310124_10108827

Scaffold Ga0310124_10108827

Overview

Basic Information
Taxon OID	3300031804 Open in IMG/M
Scaffold ID	Ga0310124_10108827 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1718
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	79.9957	Long. (^o)	-149.9767	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013821	Metagenome	268	Y
F089039	Metagenome	109	Y
F093981	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310124_101088274	F093981	N/A	VTTNSEARQATCRAETGKSLTVNGDWLAMADANGFTTGTINERMMLYFNAALGATWGVAAWDEIAWDGADGNHTNINEAAAAFGESNGIVGPGSLFSQLGSF
Ga0310124_101088275	F013821	AGG	MATTQEARQISIRAVTSTTGTHDEDWLALFTTRSAPAGEYNERMLNYINTLLSTSYTNINDAKQALATNQSADNFSSMGTFTP
Ga0310124_101088276	F089039	AGGAGG	MATRKGFPGKMTREQMGAYKGIQKAENYPGGLDIRAGNEMGFRSKDWRVKRGADKPGTFGMKLRKA

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