NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315306_10000158

Scaffold Ga0315306_10000158


Overview

Basic Information
Taxon OID3300031806 Open in IMG/M
Scaffold IDGa0315306_10000158 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)32097
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (71.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Freshwater Sediment Microbial Communities From Lake Towuti, South Sulawesi, Indonesia

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7726Long. (o)121.4938Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012730Metagenome278Y
F039458Metagenome163Y
F093178Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0315306_1000015825F039458GAGLKKTAEEQIKDLVAKHTYPPIEVIIPILERAGRGEQELTAQIYSTYATLAEGTTRILGLKDRDMKTVAKVWQILVSLEGLRPQPVELSESRFSFNLPDCPMLHVGKNVSFNVKSKFCDLICIAASRGLMDTILGSQRVTCTWNKALIRGAGKCTITFELVKHK
Ga0315306_1000015826F093178GAGMSFWKNSSLLIFVLLVAVGLTFILAWLNVAKFMSYADMQMALTTTTGTFGMVLGIITAGLMFTQGKFSELASELNDKSPDYLAKVLSLDKMQSIGTHLHALRKTFTQFAATTTIAEERSLYEKIVAKASSMFVNFAVLLNLKLKQQGLPDVDLLVSEMDLNLYRVYQKRRQSVKKEWQLLNLIKQIIDVWEGPTAIFIEKSNKESALEADLKDSLSILKLKENVDKSSINVSSEVAKTSDYLNDEINKISQRLRRDRIPQLLSQMEQASTLRGKYFYLTLVFIAAPLLINLLILPQFSQATAAFFQPVISVTSFLNIMGVVFLFLYIYKILNV
Ga0315306_100001583F012730N/AMRDKTFTEIRVDEKLCEVCDKPLRTEEKTLKTIQISDYDSYSNLLTRQRAHDRVEVDLEEGKIYLYHHDYPGDIHPGCIERL
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