Scaffold Ga0310125_10020188

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310125_10020188

Scaffold Ga0310125_10020188

Overview

Basic Information
Taxon OID	3300031811 Open in IMG/M
Scaffold ID	Ga0310125_10020188 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3553
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	79.9957	Long. (^o)	-149.9767	Alt. (m)		Depth (m)	432
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027200	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310125_100201882	F027200	N/A	MVNLFTNEKETKRAIKAAVDQYEIYRNNTLTKHKRGRKNRAKNKRAKLRGNS

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