Scaffold Ga0308411

Basic Information
Taxon OID	3300031812 Open in IMG/M
Scaffold ID	Ga0308411_10000680 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22768
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (71.88%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

22768

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (71.88%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F025421	Metagenome / Metatranscriptome	201	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F031690	Metagenome / Metatranscriptome	182	Y
F038570	Metagenome / Metatranscriptome	165	N
F042758	Metagenome / Metatranscriptome	157	N
F059420	Metagenome	134	Y
F093039	Metagenome / Metatranscriptome	106	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000068011	F042758	AGGAG	MKPTDFLNIAGRLPAQAITGATDTTSVDMQLLRGVAAVCIVGTASTPPSFKIQSSADNSTFADLTGKSITSVAANSEGIINVRDEDLPDGHRWIRAAVNGNATVAVVFIGTSARNNPPAKLASTTIVD
Ga0308411_100006802	F028964	N/A	MIGAEVTIALTSLRSPGTRVGALALSGSFERRAMEVAECELEISVRAPSYELSAYGDVLLVMLPNRREYYFITAIERRNTYYVLRGETFLRYLRDYYPDRYAGTADAQWSGDAAAGVLRSLRPIEYVPVHSFSLSFRDYWIITPNNVPPSVNVSTSFAWASRLEAAQEITRLAHAQGFPLVWWFEPGGWYGTQPSVALVFSHGLPRNGLFRPRWASSIKYDAWVYDRSQPTAGVALGYGHGEDRDVTRARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGSGQAYSQEMPRLGDQVFLVAGEHQRCAGIAHVVSERYTVTGGQVSSAEVGVVQI
Ga0308411_1000068025	F031690	AGGAG	MNPNTYPKNLLYCASFDVVVGTERSRLYLLASNAEQAAKYVWPTKTRKRTRYVVSCERLAGLQSAEEIESAALLYGFKHNHPHICEVMERHKSLASVIIETWTLRWALSLLQDDDAAKTVTINDKGLSIQGVTLGGIALYSAEMLVRSRPLRFAFEQMPHDETAQVDILGRRHARALKISLGAETHYVFDYRNGFTAFIPREEER
Ga0308411_1000068026	F029920	N/A	MISTHALERAFREERPLKGFIAPGLALSYQPREYLAIGRIERQPDADDIAQVVALAREAFIFLAREPQHEVIELNGITWHLARWLLKRESVADHLPQSKRRNR
Ga0308411_100006803	F059420	GGAGG	MEIELFRGSSALTTLHYRTVPGQYSWVLRDFQGDLMDEVEVLTREALGGRTLVAGQQGRARRIVIVLDVQGTSMVNLHAAIRELESHVRWRKGTPLELRVRAQATNPWSKTEVVLEQMSAQFEDDQYRATVTLRFACRSVYWQEFISTVSASNNTLTGNAFVVNLSTMTFTPITGITEAISNIDYRAASNEWIIFTTSQVWRAPATGGAAALIGSLSGSTALRGCVTHDGNILAVAQGVNFLVRFTYPSSGPTGLGTFNGVPVRVRRFGNTYVSVGEFSQFQTTGGLAGMVTTDVNGNVINPFSPFPTSVVFPGGGRIRDVLIKEDIGIAIAYRATSPSQSWVVVWSGQVAPYYVAEGASTWGPFEIDQSSSIDDVTICADSWIHAGRTFNTLCRLRNLSGIVPYAYPTASIGGVQDGCAVERFTFATSEPRKAFRLGDDGTAMPLFTTSANSIAVRRVGNLMCIGYVATANVWTPLNVDVGSIANTGATAEIVPRLGGLAVPVFGCYSKVDTEILGEVIDPQTQAENYEPKYHSGGVVTPLPGTNYERMFRGSMNEGVTRYSFAVGGSVTSTVTFNRYKHDWR
Ga0308411_100006805	F093039	GAG	VTLLLHLAETWGVPPWVLEQELSLFWAEAACEWEREKARQMKRAMRKHGGR
Ga0308411_100006806	F025421	N/A	MIDLSKVRRIDRNAPGSFMEYARLQAIISEGDLMAIARALESYGVNLHELSFNELTDVIKHIAGEPTPLGDTSATA
Ga0308411_100006807	F038570	AGGAG	MPATHLRRVQLGQQTAFATPVAATSILRGVKDGSVTINHDDAVVEELGRSVSDLIVFSQRHAEGELELQCTYEDILYGLFGLFGPVAPSGGARTFNAPITNYAAPQIYTIEYGAPGAEYRVVGGIIREWTLRYEANAGVTESWSFIGRSVQANALTGSLPTRVVTPVVSAHASWFMDNIGTAHGTTPIPGTVIEAELSINTNRHLKMFEGSQPITWGEGRWEAQLTLTAEFNATTKTWVDGLLINPVARNFRVNFVETPGTRELRIDFVGLLAEPIELFGDRDGNMTAELTFKALVAAPLNNWLQIRTINGIATLP
Ga0308411_100006809	F022604	GAGG	MLSAVNAVHAVVAAVPGIVAAYTTVPMSANTPALPMALVTPVSENRRQHAHELVRIETLVRVRIVHSPVAQGITELQQSALYALADAVMTALTDDITLGGQVDHVASVDADEPAIYTLAGTDYLSISVLARVVEKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308411_10000680

Overview

Ecosystem & Geography

Associated Families

Sequences