NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10018323

Scaffold Ga0308411_10018323


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10018323 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3959
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F009403Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100183234F009403AGGVFRITRRGCGSGRAPALSVVRAGARLEVREGRYGRGALYAWCDVDDSLAAHTLLLTFADMRARVIYICDPLPLISERRFFLICSGDVDPDSLPDADSHALPDADS
Ga0308411_100183236F000855GAGGMDWLEDFWSKIVSWFDELSAGVHNGVIGWVNSLVEIWNGWMDALLHPARAMPSSPQLRWIVDWLGGMADYTRLMYMLVDYVAYASVVQQALLAQLAIVAVGLGFRAWLVIRRIVLVS
Ga0308411_100183237F001381GAGMQYVVATLYVFVWLALAAAAALWLPRWALPAVLVQLAVAYVMVRAVWLTVARDD
Ga0308411_100183238F000642GGAGMQEMSVALALCAVAAAVWYMRRRDAGAGRVRGWLLLYDAVGGWRVLPASYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHRALERARESAALASLWKGGGQWLDFLRVVGVVLPAAFAYFTWAQVSALQALVAQILVLVGDK
Ga0308411_100183239F002978AGGMRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDAADPESVALARRAIATLRAAGADCSALPAVLPGSPGAPGA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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