NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10025286

Scaffold Ga0308411_10025286


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10025286 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3178
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035590Metagenome / Metatranscriptome171N
F042114Metagenome / Metatranscriptome158Y
F043791Metagenome / Metatranscriptome155N
F052993Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100252862F042114N/AMDEITRVATLNEAFKAAQRRVPFLYQHFSWLALYQPIDSQRARLFIINSHRYPQPNEYANATTEMAIFVAHAQPKRFECNGWKCLQFDLERKTLQ
Ga0308411_100252864F043791AGGAGMIENVLVAGLATVYFAFVFTAKRGPFDFFAKIRATTKRVPVLGYHLSCPTCLSLSSGALLFALTFTPLAFLVHIMAVAGIVLALHGMAGYWHSKDDEHSSV
Ga0308411_100252865F052993AGGMSIHQFKARAFQRIARKFNLRCYAFSYRDNQWLVAIRGNIVTLSPTLIPIPPDIADIRRLGNEKDYELFLALTGIGVRQSLRYQLVATGNFVTIYPKYNHAIFARSNQHVYSTRWRRIALAHAQYVFHRIKQPPCMQIAEDVERGKLMVALNYVRLGSFYIFVNGIPIDYAYPFHEQCSPQVYIGERKMLMKDNVVPWLGRLERTQLLPLPTPPPTLEQVLDKSANLDYHDEHEQEEAYP
Ga0308411_100252866F035590N/AMMSMNKKKLILEQIERLLEHHSYNERDIFYLSFDGLVTLTFSVDDNGIVTLEEAYVDGQFSIDLNRI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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