NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10049558

Scaffold Ga0308411_10049558


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10049558 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1920
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025421Metagenome / Metatranscriptome201Y
F038570Metagenome / Metatranscriptome165N
F093039Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100495581F038570N/ATTFSTPVAATSILRGVTDGSVTLNHNDAVVEELGRSVSDLVVVSQRHAEGEVELQCTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPQVYTIEYGATGAEYRVVGGILREWTLRYEANAGVTENWAFIGRSVQANALTGSLPTRVVTPVLSRHASWFVDNIGTAHGTTAIPGTVIEAELSINTNRHLKMFEGSQPLDWGEGRWEAQLTLTAEFNSTAKAWVDALLTNRVARNIRAEFVETASTRELRIDFVGLIAEPVELFGDRDGNMTAELTFKALVAGPLNNWLQIRTINGVATLP
Ga0308411_100495582F025421N/AMIDLSKVRRIDRSAPGSFMEYARLQAIITEGDLMAIARALESYGVDTSQLSFNELVDVVKHIAGEPAPLPATSATE
Ga0308411_100495583F093039GAGVTLLLHLAETWGVPPWVLEKELSLFWAEAACEYEREKARQVKRAMRKHGGR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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