NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316217_10000111

Scaffold Ga0316217_10000111


Overview

Basic Information
Taxon OID3300031813 Open in IMG/M
Scaffold IDGa0316217_10000111 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)124449
Total Scaffold Genes117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)105 (89.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020296Metagenome224Y
F028681Metagenome / Metatranscriptome190Y
F034796Metagenome173Y
F038946Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0316217_10000111106F034796AGGMSPLFVSASVLCSPRTNPEQGARRRTGILLNPSYATPPALAAVGTSTMFRVVSYAGPDGRRHVHAEPLIPAARNSSWQSGGNRLHSDDPAFADFTGGTDPIPLYDVQAA
Ga0316217_1000011134F038946GGAMGKNKKESRKRFQPGPHGGCEALLYEFREPPLQSDDEDDLPPASGQLHPRTVLIAAETFEEALQYLRFHAHAFNVHNVKCLGVILMVSGSPAD
Ga0316217_1000011138F020296GGAVRNRSTLILLAAILLSGCACFAQQSVDTVAPLRANRFTDEVYVGFDHVRTDYALATPDGDDLATTNGLDVEYDMRRKEHIAYIATVRYGGGSPFNQSLITGAAGASYLFHYSRYEPYVHAMGGYTRLASQHAAGGMYLSNVNSGFMMLFGAGLDVNVTERWGVRAISLEDMYLPFGSSRSTYWSVGAGVLYHFGRAK
Ga0316217_1000011153F028681AGGAGMSSSAGIGGAFGLLLPEFPQVAAIYGDLKLLIDKAVEEESAKDPGELESAPEVLEVRDRLIKAFAEDGIIVPASAALLWTGSEADRLARCATPADEWILGYGVFTNPWDYPPMDESFRENSSFHSWAWME
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