NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000012

Scaffold Ga0307478_10000012


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000012 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)297216
Total Scaffold Genes275 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)209 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001399Metagenome / Metatranscriptome705Y
F002101Metagenome / Metatranscriptome593Y
F004121Metagenome / Metatranscriptome452Y
F009411Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_10000012250F004121AGTAGVARKRKILAAAALWGACAWFLSLDVDFLLTKLRNAPHWLLQGSRALFMGATVAVGYAMYRKYLLELRTRNLKYAEIRKQIRRLLTDLLTTPDEDLIRQVHRTIKRIERLLRRYDPQAPRLDEERKKAKAA
Ga0307478_10000012268F009411AGGAGMLNDDARRQSEIARLGSDLRTAKIELLSAQCAADRLRLQYSVQDIISFGEPQVLKGAIASAAAVFRFFASLEHQMKQAEKQE
Ga0307478_100000125F001399GGAGGMKLNDSISTYDLAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGTEPNLQPFLVRKVAQPIATEGRSKRSAAA
Ga0307478_1000001270F002101AGAAGGMTTPIVVLPLSVPYNGAAKKKRVLLLDTSQTKRDLRAEVMRKLGIDVDCAADVLEARSWWRADLYNLVLINVAGETESRDRFCTDLRSATPPQRIAFFVGGPEYLAAAPHSDRQLPERDADALNKEMVAALLAHASDNSLQQRWGILEACKRISSVRSISEARSRAIRETPRPSRWADAIEQYSTPEAATAKPALFAKTTYSGAGFTDVLAEAALTKEVFTKEASKKDASTTEREEVL

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