 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031823 Open in IMG/M |
| Scaffold ID | Ga0307478_10000012 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 297216 |
| Total Scaffold Genes | 275 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 209 (76.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001399 | Metagenome / Metatranscriptome | 705 | Y |
| F002101 | Metagenome / Metatranscriptome | 593 | Y |
| F004121 | Metagenome / Metatranscriptome | 452 | Y |
| F009411 | Metagenome / Metatranscriptome | 318 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307478_10000012250 | F004121 | AGTAG | VARKRKILAAAALWGACAWFLSLDVDFLLTKLRNAPHWLLQGSRALFMGATVAVGYAMYRKYLLELRTRNLKYAEIRKQIRRLLTDLLTTPDEDLIRQVHRTIKRIERLLRRYDPQAPRLDEERKKAKAA |
| Ga0307478_10000012268 | F009411 | AGGAG | MLNDDARRQSEIARLGSDLRTAKIELLSAQCAADRLRLQYSVQDIISFGEPQVLKGAIASAAAVFRFFASLEHQMKQAEKQE |
| Ga0307478_100000125 | F001399 | GGAGG | MKLNDSISTYDLAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGTEPNLQPFLVRKVAQPIATEGRSKRSAAA |
| Ga0307478_1000001270 | F002101 | AGAAGG | MTTPIVVLPLSVPYNGAAKKKRVLLLDTSQTKRDLRAEVMRKLGIDVDCAADVLEARSWWRADLYNLVLINVAGETESRDRFCTDLRSATPPQRIAFFVGGPEYLAAAPHSDRQLPERDADALNKEMVAALLAHASDNSLQQRWGILEACKRISSVRSISEARSRAIRETPRPSRWADAIEQYSTPEAATAKPALFAKTTYSGAGFTDVLAEAALTKEVFTKEASKKDASTTEREEVL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |