NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000054

Scaffold Ga0307478_10000054


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000054 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)135507
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (74.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y
F002461Metagenome / Metatranscriptome557Y
F006203Metagenome / Metatranscriptome379Y
F014407Metagenome / Metatranscriptome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_10000054104F002461GAGVRTTTPNRWKFVFLLWGIILLALPSCVHAQDDGDAPLGDVARSFRKRVPPSESVIDNDNLSKVVDDAESRRATGSLPVFSLDPGRKGFRVSSPDVTCSLSFSAKTTSLLSDPALLDELPRSELAKLEGPATIDGDSLQVSMHNGTAWELREVVIGLTIVKRSEPGETTSYYGQARMFPAAAGDGPQQDSSQKLPDVTLLLRVKGSAAPSTTAIFRTPLNFALFPDQEWHWAIVKAKGIPPPTLEGTALSQTAQEDHQPVLGNIGPQVPLLTPVLSNLPPENLPPSSPSAAAH
Ga0307478_100000546F006203GAGGMLEGTVELLGGLGLSGLILLIGFSIVGSLVAALRAVGRGSATASPRK
Ga0307478_1000005471F000269GGAGVLSLLLLPSMMAGASEQPAPKPTDVPATVIAHLPLPQTAGSQMLLQKENGKQYLYVQQAAKQGFMVVDVSKPEKPNLLKRTAESNQATSGNLEMVSPSVAIAEAPEKTPTTLTSSSRPTETVRVLDLSDPRNPKTLETFTKVTSLLPDGGHNLLYLTNNEGLWILRYNHPSFLEPAKKKPPCDSNSEIMAMPPDCD
Ga0307478_1000005472F000323AGGAMRKLCFAIVLLSGSWLVGQERSSNNQQAMKDSKGQVTVQGCVGRSSGDYTLIKQNPPMTYELQGSHGVKLRNYLGQRVEVSGTESPTMSSSSDAMNKTGSAAPTTLTVTSIRTIDKDCPV
Ga0307478_1000005477F014407AGGAGLLSGGSMRVPFLYAPLVLLTATMVFAQDTNFAQGPQYLMNGSPQFARPISTPSLSLEGPPLEVGADNATGVLIAGAEGETVLPPQAVAQPKIDLFPIYYGPPPASDVEISFAESSSELAITEIPASLLDTGVGQITTAQTLRERGYGATLGGVAAYEKTHAGHATHVYTNADIDRLRGGS
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