NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307413_10332886

Scaffold Ga0307413_10332886


Overview

Basic Information
Taxon OID3300031824 Open in IMG/M
Scaffold IDGa0307413_10332886 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1165
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000651Metagenome / Metatranscriptome959Y
F001264Metagenome / Metatranscriptome735Y
F012099Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0307413_103328861F000651AGGAGVYEPITLEIDTGYGEGNYLSYTINFVGRLIRIVEAGHTTMRLYEWVDRGRLLYLVHVEEEKPGKPTRRILYPFINTHSGGATPRKGYTAEEVSRAYPELAAGRFLGLTRNSRQRGRD
Ga0307413_103328862F001264AGAAGGMRAEQTVSEMAQVVLSRHARALAQRTGEPLVEALEAVVETPAGMQLEELRSGPHQDEEVRYWQANLLFERVSEQAGHPPAAV
Ga0307413_103328863F012099N/AMCSRCGADLGTFVHDIRDREGRLPDNLTHPWFYDARGRAKQHEHDEAAYLEGSPWRYNDITASPNEE
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