NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255338_1000081

Scaffold Ga0255338_1000081


Overview

Basic Information
Taxon OID3300031825 Open in IMG/M
Scaffold IDGa0255338_1000081 Open in IMG/M
Source Dataset NameSandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)410831
Total Scaffold Genes331 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)209 (63.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: Vancouver, British Columbia
CoordinatesLat. (o)49.2598372Long. (o)-123.2459363Alt. (m)Depth (m).35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011334Metagenome292Y
F012622Metagenome279Y
F021853Metagenome / Metatranscriptome217Y
F032807Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0255338_1000081100F032807N/AVVPDRPAFTVIQVFRFTTTLTALRTRRAVVYAGAVLAGATGPAQAHAQRVLTVVAHDATLESSPTVPAGLTTVRLLLKGPVRRELVVHRIPAGTTGESLVRGAVGRPSRWFERWSFGGPTVPRDSAGDATATFDLRPGRYALVAYEVDAAGRPRGDRLIWRQITAIAASVLIPGRFPVPDATIKVKDSRIDVAGAMRPGQRTLQVENVGSRPHEVIIGRLAAGKTLDDVRRWNRDRDEPAPFVYVGGLTPMSPGAEAQTRLVLQGGVHVVLCPMRDEGTMTRDYARGVLATFKVE
Ga0255338_1000081177F012622N/AMDSRAGASIAPTTTLAHLLVDLLSSAPGLVPIYREHLALHDALLPELFMTQVTGWLSGTVHAEDGPTVPGGAAGEAARALVGVIDAHLTSGDAEVRELITLSFLDALDASPANAVLRRHFGPSLRAEAARRDGWGP
Ga0255338_1000081246F021853N/AMNRISLYVTAPPFLHVWRLGAGIPPLGAILLADLADRPATSEELRALFNLAPWCPVCVLLRSTAERRRIPRSPRMCSVSALEGGGGAATILAAVRERPHPAPMEMAEWLADRARCPGLRAPLATLFGRAISGNSRSTLVSGWSDAPVAPLGAYSGKHWQEVARLADLAAHREAMGRLLVRRNPAGAQAIRAIEELLAASEDEFRERAGWEWVFEAAARQSRAQANGSADRIGSRMVGVDATGGYRPDGRPLERAASIPA
Ga0255338_100008165F011334GGAMALDLTNRNVAHEIAERIRALIARQDAGDVTAAARRLARPIADVYSPERVLSAGDESAAFEFLVSVVRGYDTDACWLITGRSGNGAPTLSADARVTIVELLGELSDRLLDEVRNEREAARHRLMASEGPHVTIQPSSDGAIPMA
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