NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1003016

Scaffold Ga0308409_1003016


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1003016 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6768
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052924Metagenome142N
F093910Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10030161F093910N/AGLTMDVRRYIRPRLWVSHEELLASPLEGWVVGVFEDTTYGERRPRLVLEIAQDDGVRRRVPLNQASIENVVTAWGYESKNWIRHRVRISIAHKNIQGKYVQVRMVSPITTVPPIAELPEDPNPPQEPDDVPF
Ga0308409_10030163F052924GGAGMAKAQYKTEEERELKQLSIGLSNLASEIRDFTRWIRTAPDPAGKVQEYRARLDRIFDRIGQLRETDPNRVAAMERRIQAARQDLENALQQAARGVEEPKSFFRRVYDGITRVTITVLQTLGGVVGWIFRRRGGP
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