NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308409_1014771

Scaffold Ga0308409_1014771


Overview

Basic Information
Taxon OID3300031830 Open in IMG/M
Scaffold IDGa0308409_1014771 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2363
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052924Metagenome142N
F069505Metagenome124N
F093910Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0308409_10147711F093910N/AGWVVGVFEDTTYGERRPRLVLEIAQDDGVRRRIPLNQASIENVATAWGYESKNWVRHRVRISIAHKNIQGKYVQVRMVSPITTVPPIAELPEDPNPPQEPDDVPF
Ga0308409_10147712F069505AGGAGMQWCSELAYALRVAQRQCDEHVVRNALRAKFPAMPAEEIEGCADVACKAVTAARLLSKAETLDEAVQAFRSAPELDDLPQPGADIFAQVYSIFENEKSRLYYSRVFGDSLPGSSEEEKVVHAFLSFLEALATALERGVGG
Ga0308409_10147713F052924GAGGMAKAQYKTEEERELKQLSIGLSYLTSEIRDFTRWIRTAPDPAGKVQQYRARLDRIFDRIGQLRETDPNRVAAMERRIQAARQDLENALQQAARGVEEPKSFFRRLYDGITRVTITVLQTLGGVVGWIFRRRGGP
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