Basic Information | |
---|---|
Taxon OID | 3300031830 Open in IMG/M |
Scaffold ID | Ga0308409_1026102 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1623 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020833 | Metagenome / Metatranscriptome | 221 | Y |
F042064 | Metagenome | 159 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0308409_10261021 | F042064 | AGCAG | MTLAVILLLLSDVRLAKQGEHRSRRSAMQHRFASLSHGLPSHPTTILLKLMYILRALYITYSGLDKRQECGIIRSMNSIVRDYLVHALEDTNRLAKRLNRGSMSPVVAMWQEGHRLVIASCDSYQQHEFRLFIFRDDPGFPPLLHERVLAFSPTAIAATARAFYEQLGENDLLHVDYEDDKTTILLSAPCITIGLKATESLHRDHIRRFAATFTEIERPDVIKVNAKELLAALPKPRRNNERTFMFVHFHECTWQVGMQSKLNSWQPTEHNGVFDAQDVQGTPDCKLNVQMLREALEVAERYHPFSECTISLTKRNEAVLVQASVGKVMDFRAYIMPVVNLQ |
Ga0308409_10261022 | F020833 | N/A | MMDELIEYLHKHRALDRSPREAMLLVADHPTAREIIVTPDALKQALCAVLPEHGEALFELLGVRIPYSLAALCYLALYDDWLRYAMCLALEALLTNCENVV |
⦗Top⦘ |