NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318564_10480176

Scaffold Ga0318564_10480176


Overview

Basic Information
Taxon OID3300031831 Open in IMG/M
Scaffold IDGa0318564_10480176 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000767Metagenome / Metatranscriptome899Y
F085969Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0318564_104801761F000767N/AFLMDNFNGDVHEHMLPRLGTNHSHLIPVEDYARLERAVDDALRETVGPDEARVLESRLLSHYRPPFNMPPAQALLLAMRQFLPTVADPVLRRSRELYSASGAP
Ga0318564_104801762F085969N/AMTAQPAALNDGWTAFRAVNGDNAAANTAVSDLVNILDTLEVPIVVLRRDLVIAGFNRAAADALRLSLSDIGRASRE

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