NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310917_10064240

Scaffold Ga0310917_10064240


Overview

Basic Information
Taxon OID3300031833 Open in IMG/M
Scaffold IDGa0310917_10064240 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2286
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000140Metagenome / Metatranscriptome1947Y
F008633Metagenome / Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0310917_100642401F000140AGGAMAASSGVMFAEAERRFPVRIRIGVPPAGLGPRLDQITAWLDGNAGANGWAMTPSGTHGVLNDAASIYFADVAVAGAFVARWCAGYKVETSGGVYQVRDDEPTPS
Ga0310917_100642402F008633AGGGGGMNEPASLGDERPLSANVEKQSPISPGNATEPTSVQNLALTPTKQGSSPSLPFHVAIADDGLEIDAKIKKEADLDNLIQILQTIKPLLQNIYGQEPGALADPPDPPDFGEHTHPFFDASMTAHKEAETGMSFFITKAQKAELRRRGYSEEQIHEMKPEDAHRGLGLIG
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