Scaffold Ga0307518_10208234

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307518_10208234

Scaffold Ga0307518_10208234

Overview

Basic Information
Taxon OID	3300031838 Open in IMG/M
Scaffold ID	Ga0307518_10208234 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1290
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	47.6684	Long. (^o)	-121.924	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000814	Metagenome	880	Y
F027698	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307518_102082341	F027698	N/A	DDFWDGRDSVFINGLSVRSILFAQKMSASDVELGFLDDFWVAGTSFSSTVSEAAVVCVD
Ga0307518_102082343	F000814	GAGG	VCRLKISASAVELGFEDDFSEGRDSVFINGLSVRSSLFAQKMSASAVKLGFLDDYLGPGDLVFVNGF
Ga0307518_102082344	F027698	N/A	MYNEDFSVAVELGFEDDFWDKRDSVFINGLSIRSILFAQKMSASDVELGFVAHFWVPGTSFSSTVSDQQ

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