NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308000_10200281

Scaffold Ga0308000_10200281


Overview

Basic Information
Taxon OID3300031848 Open in IMG/M
Scaffold IDGa0308000_10200281 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012511Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0308000_102002812F012511N/AMGMVDKKYSNVDKKTAEILEEAKLLLEEKGYGVSKPREKSIARELMNAAYGNAFKTMSKDPDLTVRKICLKAIEDKFFDTCLDTLIKGPKKRAAFDNESPKTWTEKTVTQDIKTKGHFKRFKLIEQYIKTDMNATRTLLDPGYRPPSDKVAIKKIK
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