NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10002742

Scaffold Ga0315320_10002742


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10002742 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14502
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015477Metagenome / Metatranscriptome254Y
F041743Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0315320_1000274213F015477AGGAMEMEIAKAQNEVKCAKRDVVKASNRLAFVSSAIHNLKSRLNDDTNIEL
Ga0315320_100027428F041743GGAGMSGIQTIIDNATYITIDDQRVTGSSISRSGQYKTAERGPSPYSFTVGMHNGLTYSTNRALLSELSTLGKTIESNVSLNNNTNMNYLTAYQGAAPGSELNGITMVSTTGSNIHINTNSITQDASKLLFKKGDYIQPKGDTGTYRYPYQVKVDVPLLSQAELVIQVNRPILSQTGVALTSGGIRVGNDIRFNVKCINQPNYSVVPHDLIAFTEDFQLIEVIT
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