NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315320_10422482

Scaffold Ga0315320_10422482


Overview

Basic Information
Taxon OID3300031851 Open in IMG/M
Scaffold IDGa0315320_10422482 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)918
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006528Metagenome / Metatranscriptome371Y
F016274Metagenome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0315320_104224821F016274GGAGMIRNKFGLPLVYDFNIALRDKRRIRNLEYMRWNCPKGWESLWSNKLDQLKKNINERKNKTLN
Ga0315320_104224822F006528N/AMKEKIKLSTKIDKEKLAIQTFKNIIEGSRSINGVTWNKIKNLKRKDQIICLKQLS

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