Basic Information | |
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Taxon OID | 3300031852 Open in IMG/M |
Scaffold ID | Ga0307410_10306397 Open in IMG/M |
Source Dataset Name | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1255 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 38.5 | Long. (o) | -121.7 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001016 | Metagenome | 805 | Y |
F059701 | Metagenome / Metatranscriptome | 133 | Y |
F088384 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0307410_103063971 | F088384 | N/A | MEQWREQLVEEIRIAERGRDLLAGLERRLKERDRSDLEEHLGHLERLAGSLPEAHTVRLLVDSAVRSARTRGAGYAGSAASRSRSKTAGRISTLRGSLSRHDAFARMDA |
Ga0307410_103063972 | F001016 | N/A | VGPQDPKDVARDIFRDLSGLVGELTALKADAAHWVTDPEYAALRHCLEAAHAAVEAALVEARRRVRLNERQGE |
Ga0307410_103063973 | F059701 | AGGAG | MSEKALGMLKHMRRQIFGHPAPYVEVRGAAVSIGVNPGGSECEGLVDELLQAGYIRTYP |
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