NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310904_10436243

Scaffold Ga0310904_10436243


Overview

Basic Information
Taxon OID3300031854 Open in IMG/M
Scaffold IDGa0310904_10436243 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010431Metagenome / Metatranscriptome304Y
F090593Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0310904_104362431F010431N/AFVGGAPVPFIGKLDGKVHFVRLPANPALEQIYARTSLGKSQYSWTTTDTETYAVPASIMGLDKRDGNYAAQMQNLVLAILNSADQLRANGHPKWKSSIIQTYFPYRGYEPTNQVIQTFNFLDSRGYKIIKK
Ga0310904_104362432F090593GGAMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGWKRLSPIMNQ
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