NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10000685

Scaffold Ga0315909_10000685


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10000685 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45571
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (32.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100006855F001165N/AMTDNTPRIPDSLDMQRLQAMQLVARMKETSDRLGMGFIGGFISPDGQKFVMTNMDDDDSQALLPDELK
Ga0315909_100006856F001120N/AMTKKSIISFDRTIHGVNITEHGVKSLTKAIKLGPFQLTLNANPNGVKGSVSIPGTGLSIPNIKLI
Ga0315909_100006858F001807AGGMTNYCSVLAIEDTQFTDTHVTVTAVVDDMRLLYRATRFDPEEWAPALCTTTIELDPEEPIPLDEDGFAQYLDQLDPQWQLVDISDQ
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