NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10001757

Scaffold Ga0315909_10001757


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10001757 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28686
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F010081Metagenome / Metatranscriptome308Y
F024047Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000175713F010081N/AMKEQIDAIIKKHCLKMQEVDQSKSIPMIVKQLDHIVYEMYHELYGLRDIRANNYYLNSFTADDKKGHCC
Ga0315909_1000175714F007859AGAAGMKKLLIIALLATGCTSGMYLRYSYNKALERLPACSRVHAINNDYITFSMIETSTNNVYTSHTNYYRAYYSADGKITKIVKN
Ga0315909_1000175718F024047GGAMNIVNKNEVVDWLKNVVEKKMVKELNVPNAKVYLSCDRPNPDVILETKNDEGDLQIVRFLII
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