NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10006364

Scaffold Ga0315909_10006364


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10006364 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13337
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F016149Metagenome / Metatranscriptome249Y
F051715Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1000636413F051715N/AMEGGERHEAFTYPDEHWVYYVMADKFGWTPEQVDNLPASTADWLLAITGMVETVRADRLDKEL
Ga0315909_100063647F016149AGGAGGMGRFVAPDRGVKETVIGGKKYNPDKSGIYNVDNANHGAAMKREGFFEASLNPYAQGDYRRGFSCVQCGFDGWFRKCGRCGHENESPIARDGE
Ga0315909_100063649F002722AGGMGGRVGVRDTLAKFIANPPIATLNQVFTSFPKRINFQLNALPGQMTRSACVVFIAQERENRLAIGGAHSGWKRVDYTVILQLYVHSLHSNSEDAMSDFDILVDNIKERLRSDHNFGDSTGVLVWQGAEPVIIGRYGEPATSNEGATDIFAELEFDVTEMIQA

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