NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10010714

Scaffold Ga0315909_10010714


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10010714 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9759
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001424Metagenome / Metatranscriptome698Y
F003662Metagenome / Metatranscriptome474Y
F011843Metagenome286Y
F035676Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001071412F001424GGAGGMGQEVSKLSTGYPQNDKLVEDERVFCQNCANAEMVEQRQSMPAEQMERHRKVNAKPLQWMFDQAKVKGGWATVTWSEHQCGRTGLAAFPTDVKHRCHLFQAKATAVESESWWLT
Ga0315909_100107147F035676N/AMKSNFVNNPVRLNGNCHGHKLQICNKCALQKPPEGGVEMSATRWLCASCWTDRITGRNLKQVRDL
Ga0315909_100107148F011843GGAMNTQMLIKVRQLFNVDYVPRSTNRHNQLQYVKAMRMLGNKWLTHKDNEVQKIQ
Ga0315909_100107149F003662GGAGMKSKIATVVLKGQEWIVIDTDEEKDGKVFCTLMSPDGSTVLHAWVNINDIVGII
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