Basic Information | |
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Taxon OID | 3300031857 Open in IMG/M |
Scaffold ID | Ga0315909_10010714 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9759 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.7464 | Long. (o) | -83.3444 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001424 | Metagenome / Metatranscriptome | 698 | Y |
F003662 | Metagenome / Metatranscriptome | 474 | Y |
F011843 | Metagenome | 286 | Y |
F035676 | Metagenome | 171 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315909_1001071412 | F001424 | GGAGG | MGQEVSKLSTGYPQNDKLVEDERVFCQNCANAEMVEQRQSMPAEQMERHRKVNAKPLQWMFDQAKVKGGWATVTWSEHQCGRTGLAAFPTDVKHRCHLFQAKATAVESESWWLT |
Ga0315909_100107147 | F035676 | N/A | MKSNFVNNPVRLNGNCHGHKLQICNKCALQKPPEGGVEMSATRWLCASCWTDRITGRNLKQVRDL |
Ga0315909_100107148 | F011843 | GGA | MNTQMLIKVRQLFNVDYVPRSTNRHNQLQYVKAMRMLGNKWLTHKDNEVQKIQ |
Ga0315909_100107149 | F003662 | GGAG | MKSKIATVVLKGQEWIVIDTDEEKDGKVFCTLMSPDGSTVLHAWVNINDIVGII |
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