NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10010991

Scaffold Ga0315909_10010991


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10010991 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9608
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F058557Metagenome / Metatranscriptome135Y
F083714Metagenome112Y
F086839Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001099110F083714GAGMVFNGHKIQDIDALDEATMNEITVMYADGLIGNRSLLTMQGTLTSGVFNYLRASSSPPYTLKSVLGSAYDYIYGIEQANPSDSLLLFMSQAPNFTMDRFKGK
Ga0315909_1001099112F000934GAGMSLNTILQVSESIAINDQKLVGQVLSRNQRISTSELLTVQPFEFTMNPMKYLLYSQNRDLLSALRVADKATEQYLNFTNIGWLNYVAYQGNMTLGQIGSCQWQTSSANKTLVLGNLPSIASTAYIVKKGDFCQVERYTYIATADVQRGGGSTVNIPVHRNLISTLASPVDAVIGQYGTTISLGGTSYTGVTFPVILREYPTYTLVPMTNDSFISWNGPFVAIEDVL
Ga0315909_100109914F058557GAGMAIKRYENVVVNDLTFGTDLYGEYTTTITPKFTTRPLVSDVKNSLAITERYRVYQDLIQFTFNYTPNLKDIVDNQNLYSITWRNHEWRITDAIEANDRMSVTLMCYRSDPTTKV
Ga0315909_100109918F086839AGGMSVKFAVNGLKETLDAFKVFQEQFGDKDAKSKVLIPAVRDAMKPVLAMAKTLSPKDTGALDRSLYITARRPTRKDMKSRYVTPKDSVISLVSSRPIPKKLKQQFHAEYGNLKGSEYKKAKRKFYGEQGVMHDARAIANEFGTAKMSAKPFMRISLESQAQMVAAKLGLILKEKMEAYKAKNLTT

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