NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10011009

Scaffold Ga0315909_10011009


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10011009 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9600
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007742Metagenome345Y
F033355Metagenome177Y
F068571Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_100110092F068571AGGMKHAKLREALRAKYGARNYRIDRNDQVYVYGAMPNSHVVGWWFMGDIIGAELWMGFHNDIGGAK
Ga0315909_100110093F007742GAGGMTYYTTKGAAQALADTLAMEDTDAWLYEVHASPRGFYVAVFDFDHFFLGNL
Ga0315909_100110094F033355GGAGMQAVIIGKTTYKTNRADIFAHHAKCTGKHKPMKSKGGVKRFYPPFGATMSTADYVAAYESLNKGLTAWEWQPLSTTLTTATGADAAWEVADAASDL
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