NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10011563

Scaffold Ga0315909_10011563


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10011563 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9312
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003267Metagenome / Metatranscriptome496N
F006503Metagenome / Metatranscriptome371N
F008996Metagenome324N
F025272Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001156310F025272N/AMDILVFPILISALATLAVVEFRVLPEWFYALPFAKRKPFSCMTCFSFWLGVALTLPTCQWYLAPILGLASSATAIIIREWTFK
Ga0315909_100115632F008996N/AMKLLANIAYHHNPERLPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLADQPVTVHAHTQLSHPWMLTAVHRTRIKETYKYFDWVAYFEDDMMLPKEGFVNFTERFNSMFADGLYPSFTRIETYDDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWMFSTKRLKEVLTRSPEELDKIPDNGLFRESLASFPIWSLNLKPMLEFTEQGELADHCKVFHLTNNYKHGSTNIKTLFKR
Ga0315909_100115633F003267GGAMKVVHYYHIYCGGNWQLILNQHMMAVCNYGLINILDEIRVGIVGPPEQRKAVKEVLENSMVAPKIKIVVTRTNAWEQATLTEMYKASQEEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERSMQLLEQVDAVGCHWITKEQFPHMADANNPEGYPYFGGNFWWAKSSHIKELGEPVREQRYQAEHWIGKKPDTKVFDSNPGWPSPERFVVTF
Ga0315909_100115639F006503N/AMDLQMTNDQFIVAQKHRKYWDQYLASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAESNQNTVTIPLSNAPANPEQ
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