NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10013879

Scaffold Ga0315909_10013879


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10013879 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8364
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043829Metagenome155Y
F059966Metagenome133Y
F085713Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1001387910F059966N/AMHQKITNSITEYIKGNLDRKNVRWLLKDSNWMFEIHPKVWGSEEMFDLYYPSYEYVKFNDKGSNPDKTKIK
Ga0315909_100138795F085713N/AMGSSVVSCIHHLKLADEYAKDFVRQNPGTRGAGIFANYSLKLNWILRDVVTYPHFGDDVREGMRKEIASDAFSYDSLTEKLALLNPDQREELDGLLSDILRGKTIEITIK
Ga0315909_100138797F043829N/AMPEMQLPKWGDLSTYERHKLIGELIDAMIYHGEAVQHLQSTVEKFRMLGYVKSVILPENVEL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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