NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10060350

Scaffold Ga0315909_10060350


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10060350 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3451
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024719Metagenome / Metatranscriptome204Y
F029678Metagenome187Y
F065721Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1006035012F029678AGGAGMSKVNGFIIFNQETGQKMATLPLTIPIGSTVEAYEKAGHKVTWGWEEGEDE
Ga0315909_1006035015F024719GGAGGMGEVIELPNRGKITVVFYEVSDTQGIAIWGGENPVEALKWYRNSPAGSKIWVSQWEADEEDAKQVLEPMEITPIVLA
Ga0315909_100603507F065721AGGAGMTKYVANENGDWWEVVEGGGLYLIDTAKPDIAKAMEEENSTPNDDKFERFIWRYGIPIGLDLEATV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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