NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315909_10090674

Scaffold Ga0315909_10090674


Overview

Basic Information
Taxon OID3300031857 Open in IMG/M
Scaffold IDGa0315909_10090674 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2666
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.7464Long. (o)-83.3444Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013526Metagenome / Metatranscriptome270Y
F015730Metagenome / Metatranscriptome252Y
F029434Metagenome / Metatranscriptome188Y
F040535Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0315909_1009067410F040535AGGMLNLNYVVEKEGNLITVSDKLMLNEYQINDLMDSLVANGFTVEAMSVAPATL
Ga0315909_100906743F015730N/AMLTEKTLNKIVYEYQHGGVKNYHPEISMVERKALLKYLFSLPSKCSAECEASHTN
Ga0315909_100906744F029434AGCAGGMKKYTFGVWIDIEAENEDDAVLAFDSVLENSLVKDRYCFEIKEV
Ga0315909_100906747F013526N/AMKKNVLISFVTDANTDLDAIFALNKVMYKLPESDVVKFDAFEILDVVE
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